STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E7EZC1_DANRESi:ch211-168d1.3. (741 aa)    
Predicted Functional Partners:
raph1a
Wu:fj59g11.
   
  
 0.747
rgl3a
Ral guanine nucleotide dissociation stimulator-like 3a.
    
 
 0.717
pfdn2
Prefoldin subunit 2.
      
 0.687
RALGDS
Si:ch211-251j10.3.
    
 
 0.678
grb7
Growth factor receptor-bound protein 7.
   
  
 0.596
gapvd1
GTPase-activating protein and VPS9 domains 1.
    
 0.568
rin3
Ras and Rab interactor 3.
     
0.568
rgl2
Ral guanine nucleotide dissociation stimulator-like 2.
    
 
 0.558
aldh18a1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.558
plcl1
Phosphoinositide phospholipase C.
      
 0.542
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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