STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ggact.3Gamma-glutamylaminecyclotransferase C; May contribute to degradation of proteins cross-linked by transglutaminases by degrading the cross-link between a lysine and a glutamic acid residue. Catalyzes the formation of 5-oxo-L-proline from L-gamma-glutamyl-L-epsilon-lysine; Belongs to the gamma-glutamylcyclotransferase family. (152 aa)    
Predicted Functional Partners:
gdf5
Growth differentiation factor 5.
      
 0.714
gnat2
Guanine nucleotide-binding protein (G protein), alpha transducing activity polypeptide 2.
      
 0.452
txnrd2.2
Thioredoxin reductase 2, tandem duplicate 2.
  
 
 0.445
ENSDARP00000117118
Thioredoxin reductase 2, tandem duplicate 1.
  
 
 0.445
txnrd3
Thioredoxin reductase 3.
  
 
 0.437
dldh
Dihydrolipoyl dehydrogenase.
  
 
 0.436
gsr
Glutathione reductase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 
 0.436
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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