STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam207aFamily with sequence similarity 207, member A (245 aa)    
Predicted Functional Partners:
znf593
Zinc finger protein 593
   
    0.771
RSL1D1
Ribosomal L1 domain containing 1
   
    0.750
utp6
UTP6, small subunit (SSU) processome component, homolog (yeast)
   
    0.748
sdad1
Protein SDA1 homolog; Required for 60S pre-ribosomal subunits export to the cytoplasm
   
    0.737
noc4l
Nucleolar complex associated 4 homolog (S. cerevisiae)
   
  
 0.736
surf6
SRF6-like; Surfeit 6
   
    0.733
riok2
RIO kinase 2 (yeast)
   
  
 0.710
nol7
Nucleolar protein 7
   
    0.697
utp11l
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA
   
    0.689
ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family
   
    0.676
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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