STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDARP00000140023Si:zfos-2070c2.3. (253 aa)    
Predicted Functional Partners:
M9MM93_DANRE
Si:ch73-211l2.3.
 
0.794
ENSDARP00000134462
Si:busm1-194e12.8.
 
0.787
F1QNN0_DANRE
Si:zfos-367g9.1.
 
0.780
zgc:123107
Zgc:123107.
 
 
 0.743
ENSDARP00000151819
Ig-like domain-containing protein.
 
  0.724
mhc2a
Major histocompatibility complex class II integral membrane alpha chain gene.
 
 
0.683
F1R0K2_DANRE
Si:zfos-2070c2.1.
 
 
0.681
dZ48C11.3-001
Novel protein similar to MHC class II alpha chain.
 
 
0.677
rps14
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.639
cd74a
CD74 molecule, major histocompatibility complex, class II invariant chain a.
   
  0.611
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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