STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c6ast1Metalloendopeptidase; Six-cysteine containing astacin protease 1 (275 aa)    
Predicted Functional Partners:
kif20bb
Kinesin family member 20B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
      
 0.706
zgc:100868
Zgc:100868; Belongs to the peptidase S1 family
   
 
 0.691
necap1
NECAP endocytosis associated 1
      
 0.681
nrd1a
Nardilysin (N-arginine dibasic convertase); Belongs to the peptidase M16 family
      
 0.680
scospondin
Subcommissural organ spondin
   
 
 0.628
nrd1
Nardilysin (N-arginine dibasic convertase); Belongs to the peptidase M16 family
      
 0.610
zgc:92139
Thimet oligopeptidase 1
      
 0.610
fggy
FGGY carbohydrate kinase domain containing; Belongs to the FGGY kinase family
      
 0.608
gpr173
Probable G-protein coupled receptor 173; Orphan receptor
    
 
 0.600
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast)
      
 0.599
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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