STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdf10bGrowth differentiation factor 10b (422 aa)    
Predicted Functional Partners:
ptpn20
Protein tyrosine phosphatase, non-receptor type 20
    
 
 0.581
col6a6
Collagen, type VI, alpha 6
   
 
 0.535
col6a3
Collagen, type VI, alpha 3
   
 
 0.513
bmpr1ba
Serine/threonine-protein kinase receptor; Bone morphogenetic protein receptor, type 1ba
   
 
 0.502
gap43
Growth associated protein 43
   
  
 0.492
acvr2b
Serine/threonine-protein kinase receptor; Activin receptor IIb
    
 
 0.479
frmpd2
annotation not available
    
 
 0.478
creb5b
cAMP responsive element binding protein 5b
      
 0.463
creb5a
cAMP-responsive element-binding protein 5a; cAMP responsive element binding protein 5
      
 0.463
id2a
Inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a
      
 0.457
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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