STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo3LIM domain only protein 3. (167 aa)    
Predicted Functional Partners:
ldb1b
LIM domain-binding protein 1-A.
    
 
 0.694
ldb1a
LIM domain-binding protein 1-A; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors.
    
 
 0.662
ldb2b
LIM-domain binding factor 2b.
   
 
 0.612
ldb2a
LIM domain-binding 2a.
    
 
 0.598
ctxn1-2
Cortexin 1.
   
  
 0.581
ctxn1
Uncharacterized protein.
      
 0.568
fn3krp
Fructosamine 3 kinase-related protein; Belongs to the fructosamine kinase family.
      
 0.563
lhx9
LIM/homeobox protein Lhx9; May be involved in gonadal development.
   
 
0.552
islr2
Immunoglobulin superfamily-containing leucine-rich repeat 2.
   
 
 0.548
zmat4b
Zinc finger, matrin-type 4b.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.