STRINGSTRING
prp protein (Danio rerio) - STRING interaction network
"prp" - Persistent plexus in Danio rerio
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpPersistent plexus (1634 aa)    
Predicted Functional Partners:
p4ha3
Prolyl 4-hydroxylase, alpha polypeptide III (590 aa)
     
  0.938
col11a2
Collagen type XI alpha-2 (2021 aa)
   
 
0.935
LOC566697
Prolyl 3-hydroxylase 2; Leprecan-like 1 (678 aa)
       
  0.934
col28a1
Collagen, type XXVIII, alpha 1 (1170 aa)
   
0.933
col2a1a
Collagen type II, alpha-1a (1491 aa)
   
 
0.931
col11a1a
Collagen, type XI, alpha 1a (1813 aa)
   
 
0.931
col8a2
Collagen, type VIII, alpha 2 (686 aa)
   
0.926
col8a1a
Collagen, type VIII, alpha 1a (711 aa)
   
0.925
col10a1
Collagen, type X, alpha 1 (655 aa)
   
 
0.925
col2a1b
Collagen type II, alpha-1b (1257 aa)
   
 
0.923
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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