STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDARG00000070812Si:ch211-156l18.6; Retinoblastoma binding protein 6 (278 aa)    
Predicted Functional Partners:
pcf11
Cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)
   
 
 0.503
cpsf2
Cleavage and polyadenylation specific factor 2
   
 
 0.487
cpsf1
Cleavage and polyadenylation specific factor 1
   
 
 0.464
cpsf4
Cleavage and polyadenylation specific factor 4
   
 
 0.463
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3
   
 
 0.449
cpsf3
Cleavage and polyadenylation specific factor 3
   
 
 0.410
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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