STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbaa1Hemoglobin subunit alpha; Involved in oxygen transport from gills to the various peripheral tissues. (143 aa)    
Predicted Functional Partners:
hbba1
Hemoglobin subunit beta-1; Involved in oxygen transport from gills to the various peripheral tissues; Belongs to the globin family.
  
0.870
hbbe2
Hemoglobin beta embryonic-2; Belongs to the globin family.
  
0.815
ba1l
Ba1 globin, like.
  
0.814
hbba2
Hemoglobin, beta adult 2; Belongs to the globin family.
  
0.800
hbbe3
Hemoglobin beta embryonic-3; Belongs to the globin family.
  
0.799
hbbe1.3
Novel protein similar to zebrafish embryonic 1 beta-globin (BE1); Belongs to the globin family.
  
0.742
hbbe1.2
Hemoglobin beta embryonic-1.2.
  
0.729
hbbe1.1
Hemoglobin beta embryonic-1.1.
  
0.718
zgc:163057
Zgc:163057 protein; Belongs to the globin family.
  
  
0.569
hp
Haptoglobin.
    
 
 0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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