STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zbtb17Zinc finger and BTB domain-containing 17. (794 aa)    
Predicted Functional Partners:
map3k7cl
Map3k7 C-terminal-like.
    
 
 0.835
fcf1
FCF1 rRNA-processing protein.
      
 0.669
ptger2b
Prostaglandin E receptor 2b (subtype EP2).
      
 0.662
pip5k1ba
Phosphatidylinositol-4-phosphate 5-kinase, type I, beta a.
   
 
 0.598
spata5
Uncharacterized protein.
   
 
 0.574
ube3d
Ubiquitin protein ligase E3D.
      
 0.569
snapc3
Small nuclear RNA-activating complex, polypeptide 3.
   
  
 0.569
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 
 0.564
nol9
Nucleolar protein 9.
   
  
 0.560
naa50
N-alpha-acetyltransferase 50; N-alpha-acetyltransferase that acetylates the N-terminus of proteins that retain their initiating methionine (By similarity). Has a broad substrate specificity: able to acetylate the initiator methionine of most peptides, except for those with a proline in second position (By similarity). Also displays N-epsilon-acetyltransferase activity by mediating acetylation of the side chain of specific lysines on proteins (By similarity). The relevance of N-epsilon-acetyltransferase activity is however unclear (By similarity). Required for sister chromatid cohesion [...]
    
 
 0.551
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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