STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eva1cEva-1 homolog C (C. elegans). (438 aa)    
Predicted Functional Partners:
pofut2
Protein O-fucosyltransferase 2.
      
 0.874
dop1b
DOP1 leucine zipper-like protein B.
      
 0.868
pdxkb
Novel protein similar to vertebrate pyridoxal (Pyridoxine, vitamin B6) kinase (PDXK).
      
 0.824
urb1
URB1 ribosome biogenesis homolog.
      
 0.809
rwdd2b
RWD domain-containing 2B.
      
 0.744
ybey
YbeY metalloendoribonuclease.
      
 0.743
LOC110438491
YbeY metalloendoribonuclease.
      
 0.743
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.717
col18a1a
Collagen type XVIII alpha 1 chain a.
      
 0.674
map3k7cl
Map3k7 C-terminal-like.
   
  
 0.630
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.