STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
akirin1Zgc:64050. (189 aa)    
Predicted Functional Partners:
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A (Yeast).
   
 
 0.795
ppig
Peptidylprolyl isomerase G (cyclophilin G).
   
 
 0.790
uhmk1
U2AF homology motif (UHM) kinase 1.
    
 
 0.782
yipf4
Protein YIPF4; Involved in the maintenance of the Golgi structure. Belongs to the YIP1 family.
   
  
 0.722
khdrbs1a
KH domain-containing, RNA-binding, signal transduction-associated 1a.
   
 
 0.693
psma5
Proteasome subunit alpha type.
   
   0.687
rragca
Ras-related GTP-binding Ca.
   
  
 0.672
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.659
akirin2
Akirin 2.
  
 
0.658
rbm8a
RNA-binding protein 8A; Required for pre-mRNA splicing as component of the spliceosome (By similarity). Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain [...]
   
 
 0.646
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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