STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhrs7caDehydrogenase/reductase SDR family member 7C-B; Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (319 aa)    
Predicted Functional Partners:
tlcd1
TLC domain-containing 1.
    
 
 0.900
rimbp2-2
RIMS-binding protein 2.
      
 0.838
RIMBP2
Si:ch73-287m6.1.
      
 0.838
rimbp2
RIMS-binding protein 2.
      
 0.838
sdr16c5b
Short chain dehydrogenase/reductase family 16C, member 5b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.830
spra
Sepiapterin reductase a.
      
 0.735
cbr1
Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.715
rdh12
Retinol dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.660
rdh10b
Retinol dehydrogenase 10-B; Retinol dehydrogenase with a clear preference for NADP. Converts all-trans-retinol to all-trans-retinal. Has no detectable activity towards 11-cis-retinol, 9-cis-retinol and 13-cis-retinol (By similarity); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.637
traf4a
TNF receptor-associated factor.
      
 0.519
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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