STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pinx1PIN2/TERF1-interacting, telomerase inhibitor 1; Pin2/trf1-interacting protein 1 (355 aa)    
Predicted Functional Partners:
nop2
NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family
   
 
 0.951
bysl
Bystin-like
   
   0.946
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events
    
 
 0.942
mak16
Protein MAK16 homolog; Plays an essential role in early embryonic development
   
   0.942
ltv1
LTV1 homolog (S. cerevisiae); Belongs to the LTV1 family
   
 
 0.937
ddx54
DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
   
 
 0.933
dhx15
DEAH (Asp-Glu-Ala-His) box polypeptide 15
   
 
 0.928
rbm28
RNA binding motif protein 28
   
   0.925
sdad1
Protein SDA1 homolog; Required for 60S pre-ribosomal subunits export to the cytoplasm
   
    0.925
gltscr2
NOP53 ribosome biogenesis factor; Glioma tumor suppressor candidate region gene 2
   
  
 0.923
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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