STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr1d1Nuclear receptor subfamily 1, group d, member 1. (637 aa)    
Predicted Functional Partners:
per2
Period circadian clock 2.
   
 
 0.987
arntl1a
Aryl hydrocarbon receptor nuclear translocator-like 1a.
      
 0.981
cry2
Cryptochrome circadian regulator 2.
   
  
 0.959
per3
Period circadian clock 3.
   
 
 0.934
ncor2
Nuclear receptor corepressor 2.
    
 0.915
per1a
Period circadian clock 1a.
   
 
 0.900
npas2
BHLH-PAS transcription factor.
      
 0.890
ncor1
Nuclear receptor corepressor 1.
    
 
 0.890
per1b
Period homolog 1b (Drosophila).
   
 
 0.887
cry1a
Cryptochrome circadian regulator 1a.
   
  
 0.864
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.