STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnnt3bTroponin T type 3b (skeletal, fast). (284 aa)    
Predicted Functional Partners:
tnnc2
Fast skeletal muscle troponin C.
   
 0.941
tnni2a.1
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
 
 
 0.914
tnni2a.4
Troponin I type 2a (skeletal, fast), tandem duplicate 4.
 
 0.912
tnni2b.1
Troponin I type 2b (skeletal, fast), tandem duplicate 1.
 
 0.902
tpma
Tropomyosin alpha-1 chain; Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments; Belongs to the tropomyosin family.
   
 
 0.895
tnnc1b
Troponin C type 1b (slow).
   
 0.881
tnni1b
Troponin I type 1b (skeletal, slow).
 
 0.873
tnni2b.2
Troponin I type 2b (skeletal, fast), tandem duplicate 2.
 
 0.871
tpm2
Tropomyosin 2 (beta); Belongs to the tropomyosin family.
   
 0.868
myhz2
Myosin, heavy polypeptide 2, fast muscle-specific; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.866
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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