STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc1Tetratricopeptide repeat domain 1. (330 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1 regulatory subunit 7; Regulatory subunit of protein phosphatase 1; Belongs to the SDS22 family.
   
    0.644
ppp1r14c
Protein phosphatase 1, regulatory (inhibitor) subunit 14C.
      
 0.621
tomm70a
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
0.577
rnf41
E3 ubiquitin-protein ligase NRDP1; Acts as E3 ubiquitin-protein ligase and regulates the degradation of target proteins.
   
   0.543
hspa4b
Heat shock protein 4b.
   
 
 0.521
hspa4a
Heat shock protein 4, like.
   
 
 0.515
C13H9orf72
Zgc:100846.
      
 0.511
top1mt-2
DNA topoisomerase I mitochondrial.
    
 
 0.494
E7EZM5_DANRE
Si:dkey-274m17.3.
      
 0.485
nedd8
NEDD8 ubiquitin-like modifier.
   
 
 0.483
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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