STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc3abRUN domain-containing protein 3A. (428 aa)    
Predicted Functional Partners:
tmem145
Transmembrane protein 145.
   
  
 0.873
carmil3
Capping protein regulator and myosin 1 linker 3.
   
  
 0.818
caly
Calcyon neuron-specific vesicular protein.
   
  
 0.808
ngrn
Neugrin, neurite outgrowth-associated.
      
 0.745
sh3bgrl2
SH3 domain-binding glutamic acid-rich-like protein 2.
      
 0.744
AP3B2
AP-3 complex subunit beta.
   
  
 0.740
mapk8ip2
Mitogen-activated protein kinase 8-interacting protein 2.
   
  
 0.700
LOC100331987
Seizure-related 6 homolog (mouse)-like.
   
  
 0.675
mxd4
MAX dimerization protein 4.
      
 0.669
CDK2AP1
Cyclin dependent kinase 2 associated protein 1.
   
  
 0.659
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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