STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm14aRNA-binding motif protein 14a. (471 aa)    
Predicted Functional Partners:
tmem50a
Transmembrane protein 50A.
      
 0.751
LOC110440168
EWS RNA-binding protein 1b.
   
 
 0.729
ewsr1b
Ewing sarcoma breakpoint region 1b.
   
 
 0.641
cirbpb
Cold-inducible RNA-binding protein b.
  
 
   0.506
srsf2b
Serine and arginine-rich-splicing factor 2b.
  
   
 0.498
ctrl
Chymotrypsin-like; Belongs to the peptidase S1 family.
    
 
 0.491
rbfox1l
RNA binding protein fox-1 homolog 1-like; RNA-binding protein that regulates alternative splicing events by binding to 5'-GCAUG-3' elements. Regulates alternative splicing of tissue-specific exons.
  
  
 0.488
pabpn1l
PABPN1-like, cytoplasmic.
  
 
 0.477
srsf2a
Serine and arginine-rich-splicing factor 2a.
  
  
 0.473
rbm38
RNA-binding motif protein 38.
  
   
 0.460
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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