STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col18a1aCollagen type XVIII alpha 1 chain a. (1383 aa)    
Predicted Functional Partners:
eva1c
Eva-1 homolog C (C. elegans).
      
 0.674
pofut2
Protein O-fucosyltransferase 2.
      
 0.607
agrn
Agrin.
   
 
 0.575
gpc1b
Glypican 1b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
   
 
 0.565
gpc1a
Secreted glypican-1; Cell surface proteoglycan that bears heparan sulfate; Belongs to the glypican family.
    
 
 0.553
col19a1
Collagen, type XIX, alpha 1.
    
 
 0.550
gpc4
Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
   
 
 0.522
pdxkb
Novel protein similar to vertebrate pyridoxal (Pyridoxine, vitamin B6) kinase (PDXK).
      
 0.516
cpz
Carboxypeptidase Z.
   
  
 0.484
b3gat3
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.
   
  
 0.480
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.