STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hapln3Hyaluronan and proteoglycan link protein 3. (363 aa)    
Predicted Functional Partners:
srpx
Sushi-repeat-containing protein X-linked.
   
  
 0.674
zcchc24
Zinc finger, CCHC domain-containing 24.
   
  
 0.646
ckba
Creatine kinase, brain a; Belongs to the ATP:guanido phosphotransferase family.
      
 0.625
arrdc2
Arrestin domain-containing 2.
    
 
 0.578
ldb2a
LIM domain-binding 2a.
   
 
 0.561
card11
Caspase recruitment domain family, member 11.
    
 
 0.531
has3
Hyaluronan synthase 3.
      
 0.485
gnav1
Guanine nucleotide-binding protein (G protein) alpha v1.
    
 
 0.465
cldn5b
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.414
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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