STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver1Ribonucleoprotein, PTB-binding 1. (725 aa)    
Predicted Functional Partners:
efhb
EF-hand domain family, member B.
   
  
 0.745
GUCY1A2
Guanylate cyclase 1 soluble subunit alpha 2; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
      
 0.667
bud13
BUD13 homolog.
   
  
 0.659
rrm1
Ribonucleoside-diphosphate reductase large subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase large chain family.
   
  
 0.642
mrvi1
Murine retrovirus integration site 1 homolog.
      
 0.614
depdc1a
DEP domain-containing protein 1A.
   
  
 0.612
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.600
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.600
kpna6
Importin subunit alpha; Belongs to the importin alpha family.
   
  
 0.585
ptbp2b
Polypyrimidine tract-binding protein 2b.
   
 
 0.579
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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