STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmod2Tropomodulin 2. (344 aa)    
Predicted Functional Partners:
neb
Nebulin.
   
 0.953
tpm2
Tropomyosin 2 (beta); Belongs to the tropomyosin family.
   
 0.851
tpm4a
Tropomyosin 4a; Belongs to the tropomyosin family.
   
 0.802
actn3b
Actinin alpha 3b.
   
  
 0.756
acta1b
Actin alpha 1, skeletal muscle b.
    
 
 0.743
tnnt1
Troponin T type 1 (skeletal, slow).
   
 
 0.733
ttn.1
Titin, tandem duplicate 1.
      
 0.688
add3b
Adducin 3 (gamma) b.
    
 
 0.658
mylz3
Fast skeletal muscle myosin light polypeptide 3.
     
 0.650
add2
Adducin 2 (beta).
    
 
 0.646
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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