STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc30aLeucine-rich repeat-containing 30a; Leucine rich repeat containing 30a (249 aa)    
Predicted Functional Partners:
ankrd12
Ankyrin repeat domain 12
    
 
 0.941
epb41l3b
Erythrocyte membrane protein band 4.1-like 3b
      
 0.939
ppp4r1
Protein phosphatase 4, regulatory subunit 1
   
 
 0.854
dlgap1
Discs, large (Drosophila) homolog-associated protein 1b
    
 
 0.850
zbtb14
Zinc finger and BTB domain containing 14
    
 
 0.824
smchd1
Structural maintenance of chromosomes flexible hinge domain containing 1
      
 0.780
RAB31
RAB31, member RAS oncogene family
    
 
 0.732
atp1b4
Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane
   
    0.722
PTPRM
Si:ch1073-391i24.1; Protein tyrosine phosphatase, receptor type, M
    
 
 0.708
dlgap1a
Disks large-associated protein 1; Part of the postsynaptic scaffold in neuronal cells
    
 
 0.707
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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