Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
alyref | cdc40 | ENSDARP00000139993 | ENSDARP00000060431 | Aly/REF export factor. | Cell division cycle 40 homolog (S. cerevisiae). | 0.812 |
alyref | cwc22 | ENSDARP00000139993 | ENSDARP00000013971 | Aly/REF export factor. | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | 0.928 |
alyref | ppil1 | ENSDARP00000139993 | ENSDARP00000127620 | Aly/REF export factor. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.820 |
alyref | rnps1-2 | ENSDARP00000139993 | ENSDARP00000131565 | Aly/REF export factor. | RNA-binding protein with serine-rich domain 1; Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Putative component of the spliceosome which enhances the formation of the ATP-dependent A complex of the spliceosome. May participate in mRNA 3'-end cleavage. Also mediates increase of mRNA a [...] | 0.953 |
alyref | srrm1 | ENSDARP00000139993 | ENSDARP00000124762 | Aly/REF export factor. | Serine/arginine repetitive matrix 1. | 0.953 |
alyref | upf1 | ENSDARP00000139993 | ENSDARP00000153550 | Aly/REF export factor. | UPF1 RNA helicase and ATPase. | 0.977 |
alyref | upf2 | ENSDARP00000139993 | ENSDARP00000154595 | Aly/REF export factor. | Uncharacterized protein. | 0.564 |
alyref | upf3b | ENSDARP00000139993 | ENSDARP00000011948 | Aly/REF export factor. | UPF3B regulator of nonsense mediated mRNA decay. | 0.969 |
cdc40 | alyref | ENSDARP00000060431 | ENSDARP00000139993 | Cell division cycle 40 homolog (S. cerevisiae). | Aly/REF export factor. | 0.812 |
cdc40 | cwc22 | ENSDARP00000060431 | ENSDARP00000013971 | Cell division cycle 40 homolog (S. cerevisiae). | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | 0.998 |
cdc40 | ppil1 | ENSDARP00000060431 | ENSDARP00000127620 | Cell division cycle 40 homolog (S. cerevisiae). | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.989 |
cdc40 | rnps1-2 | ENSDARP00000060431 | ENSDARP00000131565 | Cell division cycle 40 homolog (S. cerevisiae). | RNA-binding protein with serine-rich domain 1; Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Putative component of the spliceosome which enhances the formation of the ATP-dependent A complex of the spliceosome. May participate in mRNA 3'-end cleavage. Also mediates increase of mRNA a [...] | 0.499 |
cdc40 | sf3b2 | ENSDARP00000060431 | ENSDARP00000007002 | Cell division cycle 40 homolog (S. cerevisiae). | Splicing factor 3b, subunit 2. | 0.908 |
cdc40 | srrm1 | ENSDARP00000060431 | ENSDARP00000124762 | Cell division cycle 40 homolog (S. cerevisiae). | Serine/arginine repetitive matrix 1. | 0.928 |
cdc40 | srrm2 | ENSDARP00000060431 | ENSDARP00000110322 | Cell division cycle 40 homolog (S. cerevisiae). | Serine/arginine repetitive matrix 2. | 0.916 |
cdc40 | upf3b | ENSDARP00000060431 | ENSDARP00000011948 | Cell division cycle 40 homolog (S. cerevisiae). | UPF3B regulator of nonsense mediated mRNA decay. | 0.800 |
cwc22 | alyref | ENSDARP00000013971 | ENSDARP00000139993 | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | Aly/REF export factor. | 0.928 |
cwc22 | cdc40 | ENSDARP00000013971 | ENSDARP00000060431 | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | Cell division cycle 40 homolog (S. cerevisiae). | 0.998 |
cwc22 | ppil1 | ENSDARP00000013971 | ENSDARP00000127620 | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.918 |
cwc22 | rnps1-2 | ENSDARP00000013971 | ENSDARP00000131565 | Pre-mRNA-splicing factor CWC22 homolog; Required for pre-mRNA splicing as component of the spliceosome. Promotes exon-junction complex (EJC) assembly. | RNA-binding protein with serine-rich domain 1; Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Putative component of the spliceosome which enhances the formation of the ATP-dependent A complex of the spliceosome. May participate in mRNA 3'-end cleavage. Also mediates increase of mRNA a [...] | 0.557 |
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