STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrfip1aLeucine rich repeat (in FLII) interacting protein 1a (541 aa)    
Predicted Functional Partners:
flii
Flightless I homolog (Drosophila)
    
 
 0.890
commd7
COMM domain containing 7
      
 0.782
DHX36
DEAH (Asp-Glu-Ala-His) box polypeptide 36
    
 
 0.760
dhx9
DEAH (Asp-Glu-Ala-His) box polypeptide 9
    
 
 0.632
usp28
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family
   
  
 0.620
gcfc2
GC-rich sequence DNA-binding factor 2
   
  
 0.602
lrrc32
Leucine-rich repeat-containing 32; Leucine rich repeat containing 32
    
 
 0.567
dcbld2
Discoidin, CUB and LCCL domain containing 2
      
 0.560
ints6
Integrator complex subunit 6
      
 0.510
ENSDARG00000087815
Processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)
   
    0.491
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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