STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dao.1D-amino-acid oxidase, tandem duplicate 1. (348 aa)    
Predicted Functional Partners:
sardh
Sarcosine dehydrogenase.
  
 0.966
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.956
shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.952
shmt2
Serine hydroxymethyltransferase 2 (mitochondrial).
    
 0.952
l3hypdh
Trans-L-3-hydroxyproline dehydratase.
  
 
 0.939
tha1
Threonine aldolase 1.
    
 0.934
agxtb
Serine--pyruvate aminotransferase.
  
 
 0.932
agxta
Serine--pyruvate aminotransferase.
  
 
 0.932
pipox
Pipecolic acid oxidase.
   
 
 0.931
alas1
5-aminolevulinate synthase.
  
 
 0.927
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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