STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdf2l1Stromal cell-derived factor 2-like 1. (218 aa)    
Predicted Functional Partners:
hsp90b1
Heat shock protein 90, beta (Grp94), member 1.
   
 
 0.843
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
   
 
 0.732
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.706
f7
Coagulation factor VII.
    
 
 0.669
f7l
Coagulation factor VII,-like.
    
 
 0.669
creld2
Cysteine-rich with EGF-like domain protein 2; Possible role in neuronal acetylcholine receptor transport. Belongs to the CRELD family.
   
 
 0.636
snx16
Sorting nexin 16.
      
 0.610
gmppb
Mannose-1-phosphate guanyltransferase beta; Catalyzes the formation of GDP-mannose, an essential precursor of glycan moieties of glycoproteins and glycolipids.
   
 
 0.599
dap
Death-associated protein.
   
  
 0.598
dpm3
Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.
   
  
 0.567
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.