STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vamp3Vesicle-associated membrane protein 3 (Cellubrevin). (102 aa)    
Predicted Functional Partners:
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.990
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.987
snap23.1
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.974
stx4
Syntaxin 4; Belongs to the syntaxin family.
   
 0.974
snap25a
Synaptosomal-associated protein 25-A; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 0.966
stx6
Stx6 protein; Belongs to the syntaxin family.
   
 0.964
snap25b
Synaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 0.962
zgc:101731
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.938
stx1a
Syntaxin 1A (brain); Belongs to the syntaxin family.
    
 0.932
STX3
Zgc:165520; Belongs to the syntaxin family.
    
 0.928
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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