STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abch1ATP-binding cassette, sub-family H, member 1. (705 aa)    
Predicted Functional Partners:
abcc13
ATP-binding cassette, sub-family C (CFTR/MRP), member 13.
   
 
 0.822
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
  
 0.627
SLC15A5
Si:ch211-190o6.3.
    
 
 0.604
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
    
 
 0.590
abcd3b
ATP-binding cassette, sub-family D (ALD), member 3b.
      
 0.578
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
      
 0.578
tlcd4a
TLC domain-containing 4a.
      
 0.552
sp4
Sp4 transcription factor.
    
 
 0.551
abcg2a
ATP-binding cassette, sub-family G (WHITE), member 2a.
   
 
0.546
abca1b
ATP-binding cassette, sub-family A (ABC1), member 1B.
      
 0.542
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.