STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr19WD repeat domain 19. (1372 aa)    
Predicted Functional Partners:
ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.999
wdr35
WD repeat-containing protein 35.
  
 0.999
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
 0.999
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.982
ift172
Intraflagellar transport protein 172 homolog; Required for the maintenance and formation of cilia.
   
 
 0.951
ift88
Intraflagellar transport 88 homolog.
   
 
 0.933
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
  
 
 0.926
DYNC2H1
Dynein cytoplasmic 2 heavy chain 1.
     
 0.913
Ttc21a
Uncharacterized protein.
   
 0.905
wdr60
WD repeat domain 60.
   
 
 0.900
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.