STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tube1Tubulin, epsilon 1; Belongs to the tubulin family. (470 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
   
 
 0.771
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.670
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
  
 
0.669
dclk1a
Doublecortin-like kinase 1a.
    
 
 0.659
dclk1b
Doublecortin-like kinase 1b.
    
 
 0.659
ckap5
Cytoskeleton-associated protein 5.
   
 
 0.639
tcp1
Tcp1 protein.
   
 
 0.637
tbca
Tubulin-specific chaperone A; Belongs to the TBCA family.
   
 
 0.627
lama4
Laminin, alpha 4.
 
  
 
 0.615
tuba7l
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 
0.611
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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