STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ank2bAnkyrin 2b, neuronal. (312 aa)    
Predicted Functional Partners:
ank3b-2
Zgc:171763 protein.
 
    
 0.909
obscnb
Obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b.
   
 
 0.860
acta1b
Actin alpha 1, skeletal muscle b.
   
 
 0.764
slc4a1a
Anion exchange protein.
   
 
 0.760
trpv1
Transient receptor potential cation channel, subfamily V, member 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.749
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.669
trpm4a
Transient receptor potential cation channel, subfamily M, member 4a.
      
 0.668
trpc6a
Transient receptor potential cation channel, subfamily C, member 6a; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.666
trpm6
Transient receptor potential cation channel, subfamily M, member 6.
      
 0.663
A2BIM2_DANRE
Si:ch211-203b8.6.
 
 
 
0.656
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.