STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tet3Tet methylcytosine dioxygenase 3 (1101 aa)    
Predicted Functional Partners:
tdg
Thymine DNA glycosylase, tandem duplicate 1; thymine-DNA glycosylase
   
  
 0.850
dnmt1
DNA (cytosine-5-)-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
      
 0.822
LOC558951
Thymine DNA glycosylase, tandem duplicate 2; thymine-DNA glycosylase
   
  
 0.743
dnmt4
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1; DNA (cytosine-5-)-methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
   
  
 0.740
prmt5
Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA)
      
 0.710
grid1
Glutamate receptor, ionotropic, delta 1a
      
 0.697
cxxc4
CXXC finger 4
      
 0.688
dnmt3ab
DNA (cytosine-5-)-methyltransferase 3 alpha b; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
   
  
 0.675
tmem150c
Transmembrane protein 150C
      
 0.646
nanog
Ovary-expressed homeobox protein; Nanog homeobox
   
 
 0.637
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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