Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
frmpd1a | gcna | ENSDARP00000118540 | ENSDARP00000141634 | FERM and PDZ domain-containing 1a. | Germ cell nuclear acidic peptidase. | 0.938 |
frmpd1a | lenep | ENSDARP00000118540 | ENSDARP00000112893 | FERM and PDZ domain-containing 1a. | Lens epithelial protein. | 0.959 |
frmpd1a | pbxip1b | ENSDARP00000118540 | ENSDARP00000110994 | FERM and PDZ domain-containing 1a. | Pre-B-cell leukemia homeobox-interacting protein 1b. | 0.944 |
frmpd1a | tlr19-2 | ENSDARP00000118540 | ENSDARP00000150577 | FERM and PDZ domain-containing 1a. | Toll-like receptor 19. | 0.738 |
gcna | frmpd1a | ENSDARP00000141634 | ENSDARP00000118540 | Germ cell nuclear acidic peptidase. | FERM and PDZ domain-containing 1a. | 0.938 |
gcna | lenep | ENSDARP00000141634 | ENSDARP00000112893 | Germ cell nuclear acidic peptidase. | Lens epithelial protein. | 0.938 |
gcna | pbxip1b | ENSDARP00000141634 | ENSDARP00000110994 | Germ cell nuclear acidic peptidase. | Pre-B-cell leukemia homeobox-interacting protein 1b. | 0.869 |
gcna | tlr19-2 | ENSDARP00000141634 | ENSDARP00000150577 | Germ cell nuclear acidic peptidase. | Toll-like receptor 19. | 0.647 |
irak4 | myd88 | ENSDARP00000135636 | ENSDARP00000020711 | Interleukin-1 receptor-associated kinase 4. | Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and Il-1 receptor signaling pathway in the innate immune response. | 0.999 |
irak4 | ticam1 | ENSDARP00000135636 | ENSDARP00000130000 | Interleukin-1 receptor-associated kinase 4. | Toll-like receptor adaptor molecule 1. | 0.978 |
irak4 | tirap | ENSDARP00000135636 | ENSDARP00000103037 | Interleukin-1 receptor-associated kinase 4. | Toll-interleukin 1 receptor (TIR) domain-containing adaptor protein. | 0.990 |
irak4 | tlr19-2 | ENSDARP00000135636 | ENSDARP00000150577 | Interleukin-1 receptor-associated kinase 4. | Toll-like receptor 19. | 0.613 |
irak4 | traf6 | ENSDARP00000135636 | ENSDARP00000036715 | Interleukin-1 receptor-associated kinase 4. | TNF receptor-associated factor 6; E3 ubiquitin-protein ligase that mediates ubiquitination of proteins. Adapter protein that seems to play a role in signal transduction. | 0.998 |
irak4 | unc93b1 | ENSDARP00000135636 | ENSDARP00000139372 | Interleukin-1 receptor-associated kinase 4. | Unc-93 homolog B1, TLR-signaling regulator. | 0.548 |
lenep | frmpd1a | ENSDARP00000112893 | ENSDARP00000118540 | Lens epithelial protein. | FERM and PDZ domain-containing 1a. | 0.959 |
lenep | gcna | ENSDARP00000112893 | ENSDARP00000141634 | Lens epithelial protein. | Germ cell nuclear acidic peptidase. | 0.938 |
lenep | pbxip1b | ENSDARP00000112893 | ENSDARP00000110994 | Lens epithelial protein. | Pre-B-cell leukemia homeobox-interacting protein 1b. | 0.950 |
lenep | tlr19-2 | ENSDARP00000112893 | ENSDARP00000150577 | Lens epithelial protein. | Toll-like receptor 19. | 0.743 |
myd88 | irak4 | ENSDARP00000020711 | ENSDARP00000135636 | Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and Il-1 receptor signaling pathway in the innate immune response. | Interleukin-1 receptor-associated kinase 4. | 0.999 |
myd88 | ticam1 | ENSDARP00000020711 | ENSDARP00000130000 | Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and Il-1 receptor signaling pathway in the innate immune response. | Toll-like receptor adaptor molecule 1. | 0.921 |
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