STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
masp2Mannan-binding lectin serine peptidase 2; Belongs to the peptidase S1 family. (685 aa)    
Predicted Functional Partners:
cpb2
Carboxypeptidase B2 (plasma).
   
 
 0.830
hbl1
Zmp:0000000729.
   
 0.825
c8g
Complement component 8, gamma polypeptide; Belongs to the calycin superfamily. Lipocalin family.
   
 
 0.808
ldlrb
Low density lipoprotein receptor b.
    
 
 0.747
pcdh1g1
Protocadherin 1 gamma 1.
      
 0.719
hbl4
Hexose-binding lectin 4.
   
 
 0.710
c1qa
Complement component 1, q subcomponent, A chain.
   
 0.700
c1qc
Complement component 1, q subcomponent, C chain.
   
 
 0.699
cfb
Complement factor B; Belongs to the peptidase S1 family.
   
0.696
c4b
Complement 4B (Chido blood group).
   
 0.690
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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