STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc29Tetratricopeptide repeat domain 29. (440 aa)    
Predicted Functional Partners:
Ttc21a
Uncharacterized protein.
   
  
 0.866
cfap58
Cilia and flagella-associated protein 58.
   
  
 0.862
dnah6
Dynein, axonemal, heavy chain 6.
   
  
 0.838
bod1
Biorientation of chromosomes in cell division 1.
      
 0.831
maats1
MYCBP-associated, testis-expressed 1.
   
  
 0.827
dnah2
Dynein, axonemal, heavy chain 2.
   
  
 0.809
cfap43
Cilia and flagella-associated protein 43.
   
  
 0.776
cfap70
Cilia and flagella-associated protein 70.
   
 
 0.768
spef2
Sperm flagellar 2.
   
  
 0.764
cep112
Centrosomal protein 112.
      
 0.752
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.