Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cul1a | fbxl4 | ENSDARP00000109683 | ENSDARP00000122173 | Cullin 1a; Belongs to the cullin family. | F-box and leucine-rich repeat protein 4. | 0.740 |
cul1a | fbxo11a | ENSDARP00000109683 | ENSDARP00000134626 | Cullin 1a; Belongs to the cullin family. | F-box protein 11a. | 0.767 |
cul1a | fbxo9 | ENSDARP00000109683 | ENSDARP00000093542 | Cullin 1a; Belongs to the cullin family. | F-box only protein 9; Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling. | 0.836 |
cul1a | skp1 | ENSDARP00000109683 | ENSDARP00000015887 | Cullin 1a; Belongs to the cullin family. | S-phase kinase-associated protein 1A; Belongs to the SKP1 family. | 0.999 |
dguok | fbxl4 | ENSDARP00000103858 | ENSDARP00000122173 | Deoxyguanosine kinase. | F-box and leucine-rich repeat protein 4. | 0.652 |
dguok | mgme1 | ENSDARP00000103858 | ENSDARP00000006549 | Deoxyguanosine kinase. | Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family. | 0.726 |
dguok | slc25a21 | ENSDARP00000103858 | ENSDARP00000079916 | Deoxyguanosine kinase. | Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family. | 0.553 |
fbxl4 | cul1a | ENSDARP00000122173 | ENSDARP00000109683 | F-box and leucine-rich repeat protein 4. | Cullin 1a; Belongs to the cullin family. | 0.740 |
fbxl4 | dguok | ENSDARP00000122173 | ENSDARP00000103858 | F-box and leucine-rich repeat protein 4. | Deoxyguanosine kinase. | 0.652 |
fbxl4 | fbxo11a | ENSDARP00000122173 | ENSDARP00000134626 | F-box and leucine-rich repeat protein 4. | F-box protein 11a. | 0.644 |
fbxl4 | fbxo9 | ENSDARP00000122173 | ENSDARP00000093542 | F-box and leucine-rich repeat protein 4. | F-box only protein 9; Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling. | 0.708 |
fbxl4 | mgme1 | ENSDARP00000122173 | ENSDARP00000006549 | F-box and leucine-rich repeat protein 4. | Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family. | 0.693 |
fbxl4 | pnisr | ENSDARP00000122173 | ENSDARP00000139818 | F-box and leucine-rich repeat protein 4. | PNN-interacting serine/arginine-rich protein. | 0.660 |
fbxl4 | rmnd1 | ENSDARP00000122173 | ENSDARP00000032298 | F-box and leucine-rich repeat protein 4. | Required for meiotic nuclear division 1 homolog. | 0.636 |
fbxl4 | skp1 | ENSDARP00000122173 | ENSDARP00000015887 | F-box and leucine-rich repeat protein 4. | S-phase kinase-associated protein 1A; Belongs to the SKP1 family. | 0.842 |
fbxl4 | slc25a21 | ENSDARP00000122173 | ENSDARP00000079916 | F-box and leucine-rich repeat protein 4. | Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family. | 0.648 |
fbxl4 | trmt5 | ENSDARP00000122173 | ENSDARP00000080424 | F-box and leucine-rich repeat protein 4. | tRNA (guanine(37)-N1)-methyltransferase; Involved in mitochondrial tRNA methylation (By similarity). Specifically methylates the N1 position of guanosine-37 in various tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family. | 0.644 |
fbxo11a | cul1a | ENSDARP00000134626 | ENSDARP00000109683 | F-box protein 11a. | Cullin 1a; Belongs to the cullin family. | 0.767 |
fbxo11a | fbxl4 | ENSDARP00000134626 | ENSDARP00000122173 | F-box protein 11a. | F-box and leucine-rich repeat protein 4. | 0.644 |
fbxo11a | fbxo9 | ENSDARP00000134626 | ENSDARP00000093542 | F-box protein 11a. | F-box only protein 9; Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling. | 0.648 |
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