Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
apmap | exosc10 | ENSDARP00000004202 | ENSDARP00000122676 | Adipocyte plasma membrane-associated protein. | Exosome component 10. | 0.937 |
apmap | gmps | ENSDARP00000004202 | ENSDARP00000097707 | Adipocyte plasma membrane-associated protein. | Guanine monophosphate synthase. | 0.649 |
apmap | pcna | ENSDARP00000004202 | ENSDARP00000070780 | Adipocyte plasma membrane-associated protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.528 |
apmap | smfn | ENSDARP00000004202 | ENSDARP00000009619 | Adipocyte plasma membrane-associated protein. | Small fragment nuclease. | 0.558 |
apmap | yars1 | ENSDARP00000004202 | ENSDARP00000052125 | Adipocyte plasma membrane-associated protein. | Tyrosine--tRNA ligase, cytoplasmic; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). | 0.636 |
apmap | zgc:152968 | ENSDARP00000004202 | ENSDARP00000122980 | Adipocyte plasma membrane-associated protein. | Zgc:152968. | 0.551 |
exosc10 | apmap | ENSDARP00000122676 | ENSDARP00000004202 | Exosome component 10. | Adipocyte plasma membrane-associated protein. | 0.937 |
exosc10 | smfn | ENSDARP00000122676 | ENSDARP00000009619 | Exosome component 10. | Small fragment nuclease. | 0.729 |
exosc10 | zgc:152968 | ENSDARP00000122676 | ENSDARP00000122980 | Exosome component 10. | Zgc:152968. | 0.606 |
exosc10 | zgc:194209 | ENSDARP00000122676 | ENSDARP00000057518 | Exosome component 10. | Zgc:194209 protein. | 0.937 |
fbxo18 | pcna | ENSDARP00000144816 | ENSDARP00000070780 | F-box DNA helicase 1. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.961 |
fbxo18 | yars1 | ENSDARP00000144816 | ENSDARP00000052125 | F-box DNA helicase 1. | Tyrosine--tRNA ligase, cytoplasmic; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). | 0.568 |
fbxo18 | zgc:152968 | ENSDARP00000144816 | ENSDARP00000122980 | F-box DNA helicase 1. | Zgc:152968. | 0.499 |
gmps | apmap | ENSDARP00000097707 | ENSDARP00000004202 | Guanine monophosphate synthase. | Adipocyte plasma membrane-associated protein. | 0.649 |
gmps | yars1 | ENSDARP00000097707 | ENSDARP00000052125 | Guanine monophosphate synthase. | Tyrosine--tRNA ligase, cytoplasmic; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). | 0.600 |
gmps | zgc:152968 | ENSDARP00000097707 | ENSDARP00000122980 | Guanine monophosphate synthase. | Zgc:152968. | 0.561 |
gmps | zgc:194209 | ENSDARP00000097707 | ENSDARP00000057518 | Guanine monophosphate synthase. | Zgc:194209 protein. | 0.649 |
leo1 | zgc:152968 | ENSDARP00000072160 | ENSDARP00000122980 | RNA polymerase-associated protein LEO1; Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development. | Zgc:152968. | 0.514 |
pan3 | zgc:152968 | ENSDARP00000048272 | ENSDARP00000122980 | PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] | Zgc:152968. | 0.772 |
pcna | apmap | ENSDARP00000070780 | ENSDARP00000004202 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | Adipocyte plasma membrane-associated protein. | 0.528 |
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