STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col24a1-2Collagen type XXIV alpha 1. (201 aa)    
Predicted Functional Partners:
col24a1
LAM_G_DOMAIN domain-containing protein.
 
      0.723
col5a1
Procollagen, type V, alpha 1.
   
 
0.597
fbln7
Fibulin 7.
    
 
 0.580
col1a2
Collagen, type I, alpha 2.
     
0.566
col4a6
Collagen, type IV, alpha 6.
 
 
 
 0.551
col11a1b
Collagen, type XI, alpha 1b.
   
 
0.548
col5a2b
Collagen, type V, alpha 2b.
     
0.543
col5a2a
Collagen, type V, alpha 2a.
     
0.543
otol1b
Otolin 1b.
     
  0.540
otol1a
Otolin-1-A; Collagen-like protein, which provides an organic scaffold for otoliths onto the sensory epithelium of the inner ear. Acts as a scaffold for biomineralization by sequestering calcium ; Belongs to the OTOL1 family.
     
  0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.