STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zgc:174259Zgc:174259; Belongs to the serpin family. (410 aa)    
Predicted Functional Partners:
f2
Coagulation factor II (thrombin); Belongs to the peptidase S1 family.
   
 0.710
f10
Coagulation factor X.
   
  0.568
sec22a
SEC22 homolog A, vesicle-trafficking protein; Belongs to the synaptobrevin family.
   
  0.530
sec24c
SEC24 homolog C, COPII coat complex component.
     
 0.530
sec22c
SEC22 homolog C, vesicle-trafficking protein; Belongs to the synaptobrevin family.
   
  0.530
lman1
Lectin, mannose-binding, 1.
    
 0.525
serpinc1
Serine (Or cysteine) proteinase inhibitor, clade C (Antithrombin), member 1; Belongs to the serpin family.
  
 
0.523
sec22bb
Vesicle-trafficking protein SEC22b-B; SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.
   
  0.520
mcfd2
Multiple coagulation factor deficiency 2, ER cargo receptor complex subunit.
     
 0.516
fam20cb
FAM20C golgi-associated secretory pathway kinase b.
    
  0.511
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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