STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galnsGalactosamine (N-acetyl)-6-sulfatase. (514 aa)    
Predicted Functional Partners:
glb1
Beta-galactosidase.
  
 0.946
glb1l
Galactosidase, beta 1-like; Belongs to the glycosyl hydrolase 35 family.
  
 0.942
GM2A
ML domain-containing protein.
   
  
 0.840
sumf1
Sulfatase-modifying factor 1.
  
 
 0.805
gm2a
GM2 ganglioside activator.
   
  
 0.794
lamp1a
Lysosomal-associated membrane protein 1a.
   
 
 0.763
cln5
Uncharacterized protein.
   
 
 0.688
manba
Mannosidase, beta A, lysosomal.
  
 
 0.677
neu4
Neu4 protein.
    
 
 0.676
eya2
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
  
 0.655
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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