STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tap1Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP). (736 aa)    
Predicted Functional Partners:
tap2t
Transporter-associated with antigen-processing, subunit type t, teleost-specific.
  
  
0.951
tap2a
Transporter-associated with antigen-processing, subunit type a.
  
 
0.950
tapbp.1
TAP-binding protein (tapasin), tandem duplicate 1.
   
 0.939
tapbp.2
TAP-binding protein (tapasin), tandem duplicate 2.
   
 0.888
b2ml
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.797
tapbpl
TAP-binding protein-like.
   
 
 0.795
calr
Calreticulin.
   
 0.787
pdia3
Protein disulfide-isomerase.
   
 0.787
b2m
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system (By similarity).
   
 0.783
calr3a
Calreticulin.
   
 0.778
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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