STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EML5Si:dkey-1f12.3. (1969 aa)    
Predicted Functional Partners:
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 
 0.581
taf12
TAF12 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
   
 
 0.540
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 
 0.537
taf9
TAF9 RNA polymerase II, TATA box-binding protein (TBP)-associated factor.
    
 
 0.537
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.512
wdr19
WD repeat domain 19.
   
 
 0.503
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 
 0.499
cpsf1
Cleavage and polyadenylation-specific factor 1.
   
 
 0.490
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.481
tex10
Testis-expressed protein 10 homolog; Component of the PELP1 complex involved in the nucleolar steps of 28S rRNA maturation and the subsequent nucleoplasmic transit of the pre-60S ribosomal subunit.
   
 
 0.477
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.