STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kcna6aPotassium voltage-gated channel, shaker-related, subfamily, member 6 a; Belongs to the potassium channel family. (475 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.861
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.861
kcnab2a
Potassium voltage-gated channel, shaker-related subfamily, beta member 2 a.
   
 
 0.778
cacnb4b
Voltage-gated calcium channel beta-4 subunit variant 2.
   
  
 0.677
crybgx
Crystallin beta gamma X; Belongs to the beta/gamma-crystallin family.
   
  
 0.671
rps28
40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.
   
 
 0.669
rpl34
60S ribosomal protein L34; Component of the large ribosomal subunit.
  
 
 0.667
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.660
zgc:171772
Zgc:171772 protein.
   
 
 0.659
rpl31
Ribosomal protein L31.
   
 
 0.658
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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