STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaRPolyhydroxyalkanoate synthesis repressor PhaR; Protein involved in DNA binding. (187 aa)    
Predicted Functional Partners:
phaC
Poly(3-hydroxybutyrate) polymerase; Protein involved in transferase activity and poly-hydroxybutyrate biosynthetic process.
 
   
 0.880
MW7_1838
acetoacetyl-CoA reductase; Protein involved in nucleotide binding and poly-hydroxybutyrate biosynthetic process; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.755
MW7_1809
Granule protein PhaP.
 
   
 0.719
MW7_2273
Protein involved in oxidation reduction.
 
      0.646
MW7_0449
Polyhydroxyalkanoate depolymerase.
 
   
 0.596
MW7_1803
Protein involved in two-component sensor activity and two-component signal transduction system (phosphorelay).
  
     0.455
MW7_1752
Protein involved in hydrolase activity.
  
     0.448
MW7_1735
Transmembrane lipoprotein.
  
     0.443
MW7_1837
Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.434
icmF
Methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
      
 0.406
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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