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hemD protein (Halalkalicoccus jeotgali) - STRING interaction network
"hemD" - uroporphyrinogen-III synthase in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemDuroporphyrinogen-III synthase (247 aa)    
Predicted Functional Partners:
C497_18797
uroporphyrin-III C-methyltransferase (246 aa)
 
  0.998
C497_18802
Porphobilinogen deaminase (379 aa)
 
  0.997
C497_18862
Delta-aminolevulinic acid dehydratase (332 aa)
 
 
  0.948
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) (436 aa)
 
 
  0.914
hemL
Glutamate-1-semialdehyde aminotransferase (446 aa)
 
 
  0.873
C497_13910
Class III aminotransferase (434 aa)
 
 
  0.859
C497_14247
Hypothetical protein (288 aa)
 
   
  0.649
C497_18807
DNA binding domain-containing protein (217 aa)
              0.630
C497_04502
Siroheme synthase (214 aa)
 
   
  0.624
C497_08893
Glutamate synthase (1518 aa)
         
  0.603
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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