STRINGSTRING
C497_18767 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_18767" - DNA binding domain-containing protein in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_18767DNA binding domain-containing protein (211 aa)    
Predicted Functional Partners:
C497_11383
Bacterio-opsin activator-like protein (546 aa)
   
          0.645
C497_18122
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (106 aa)
 
          0.605
C497_07419
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (109 aa)
 
          0.604
C497_03960
Transfer complex protein (650 aa)
   
          0.554
C497_07629
Hypothetical protein (246 aa)
   
          0.538
C497_11732
Twin-arginine translocation protein, TatA/E family subunit (111 aa)
   
          0.499
C497_14342
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication (398 aa)
   
          0.472
C497_15413
CBS domain containing membrane protein (380 aa)
   
          0.463
C497_14652
Hypothetical protein (265 aa)
 
          0.455
C497_12352
Type I phosphodiesterase/nucleotide pyrophosphatase (535 aa)
   
          0.447
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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