STRINGSTRING
C497_18647 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_18647" - Phosphodiesterase in Halalkalicoccus jeotgali
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_18647Phosphodiesterase (219 aa)    
Predicted Functional Partners:
C497_18672
GTP-binding protein (213 aa)
     
  0.952
C497_03500
50S ribosomal protein L32e (234 aa)
     
  0.880
C497_13543
DNA replication factor Dna2 (903 aa)
   
    0.866
rpl15
50S ribosomal protein L15P; Binds to the 23S rRNA (173 aa)
   
 
    0.855
C497_15678
Peptidylprolyl isomerase (180 aa)
   
  0.854
rpl2
50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (240 aa)
   
 
    0.853
HacjB3_08665
50S ribosomal protein L24E (136 aa)
     
    0.852
C497_11213
Peptide chain release factor 1 (363 aa)
     
    0.852
C497_04802
Hypothetical protein (292 aa)
     
    0.852
prf1
Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (413 aa)
     
    0.852
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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